loki2.inference.overlap_cell_cleaner
====================================

.. py:module:: loki2.inference.overlap_cell_cleaner

.. autoapi-nested-parse::

   Clean overlapping cells from a list of detected cells.

   This module provides functionality for post-processing detected cells
   to remove duplicates and overlaps that occur at patch boundaries.







Module Contents
---------------

.. py:class:: OverlapCellCleaner(cell_list: List[Dict[str, Any]], logger: logging.Logger)

   Post-processor for removing overlapping cells from detection results.

   This class handles cleaning of cells detected at patch boundaries,
   removing duplicates and merging overlapping detections.


   .. py:attribute:: logger


   .. py:attribute:: cell_df


   .. py:attribute:: mid_cells


   .. py:attribute:: cell_df_margin


   .. py:method:: clean_detected_cells() -> pandas.DataFrame

      Main Post-Processing coordinator, entry point

      :returns: DataFrame with post-processed and cleaned cells
      :rtype: pd.DataFrame



   .. py:method:: convert_coordinates_vectorized(cell_df: pandas.DataFrame) -> pandas.DataFrame

      Convert the coordinates of the cells to a string representation for fast querying.

      :param cell_df: DataFrame with cells containing patch_coordinates.

      :returns: DataFrame with converted coordinates as strings.
      :rtype: pd.DataFrame



.. py:function:: convert_coordinates(row: pandas.Series) -> pandas.Series

   Convert a row from x,y type to one string representation of the patch position for fast querying
   Repr: x_y

   :param row: Row to be processed
   :type row: pd.Series

   :returns: Processed Row
   :rtype: pd.Series