loki.decompose.generate_feature_ad

loki.decompose.generate_feature_ad(ad_expr, feature_path, sc=False)

Generates an AnnData object with OmiCLIP text or image embeddings.

Parameters:

• ad_expr – AnnData object containing metadata for the dataset.

• feature_path – Path to the CSV file containing the features to be loaded.

• sc – Boolean flag indicating whether to copy single-cell metadata or ST metadata. Default is False (ST).

Returns:

A new AnnData object with the loaded features and relevant metadata from ad_expr.