loki.predex.predict_st_gene_expr

loki.predex.predict_st_gene_expr(image_text_similarity, train_data)

Predicts ST gene expression by H&E image.

Parameters:

• image_text_similarity – Numpy array of similarities between images and text features (shape: [n_samples, n_genes]).

• train_data – Numpy array or DataFrame of training data used for making predictions (shape: [n_genes, n_shared_genes]).

Returns:

Numpy array or DataFrame containing the predicted gene expression levels for the samples.