API Reference

This page contains auto-generated API reference documentation [1].

• loki2
  • loki2.cl
    • loki2.cl.model_cl
    • loki2.cl.prepare_training
    • loki2.cl.project_raw_embeddings
    • loki2.cl.train_projection_wds
    • loki2.cl.utils
  • loki2.config
    • loki2.config.config
    • loki2.config.templates
  • loki2.data
    • loki2.data.dataclass
      • loki2.data.dataclass.cell_graph
      • loki2.data.dataclass.wsi
  • loki2.inference
    • loki2.inference.cli
    • loki2.inference.inference_disk
    • loki2.inference.inference_memory
    • loki2.inference.overlap_cell_cleaner
    • loki2.inference.postprocessing_cupy
    • loki2.inference.wsi_meta
  • loki2.mil
    • loki2.mil.models
      • loki2.mil.models.src
        • loki2.mil.models.src.dataset
        • loki2.mil.models.src.model
        • loki2.mil.models.src.train
        • loki2.mil.models.src.utils
      • loki2.mil.models.TCGA-Loki2_MILCell_blca_metastasis_5fold
      • loki2.mil.models.TCGA-Loki2_MILCell_blca_stage_5fold
    • loki2.mil.prampt_generate
      • loki2.mil.prampt_generate.blca_metastasis_prampt
      • loki2.mil.prampt_generate.blca_stage_prampt
    • loki2.mil.prampt_downsample
  • loki2.models
    • loki2.models.base
      • loki2.models.base.vision_transformer
    • loki2.models.cell_segmentation
      • loki2.models.cell_segmentation.backbones
      • loki2.models.cell_segmentation.cellvit
      • loki2.models.cell_segmentation.loki2_sam
      • loki2.models.cell_segmentation.postprocessing
    • loki2.models.classifier
      • loki2.models.classifier.linear_classifier
    • loki2.models.utils
      • loki2.models.utils.blocks
      • loki2.models.utils.sam_utils
  • loki2.utils
    • loki2.utils.logger
    • loki2.utils.tools
  • loki2.detect_cells
  • loki2.encode_trans
  • loki2.immstain
  • loki2.plot
  • loki2.preprocess
  • loki2.psdtime
  • loki2.retrieve
  • loki2.retrieve_from_sc

[1]

Created with sphinx-autoapi