loki2.inference.overlap_cell_cleaner

Clean overlapping cells from a list of detected cells.

This module provides functionality for post-processing detected cells to remove duplicates and overlaps that occur at patch boundaries.

Module Contents

class loki2.inference.overlap_cell_cleaner.OverlapCellCleaner(cell_list: List[Dict[str, Any]], logger: logging.Logger)

Post-processor for removing overlapping cells from detection results.

This class handles cleaning of cells detected at patch boundaries, removing duplicates and merging overlapping detections.

clean_detected_cells() → pandas.DataFrame

Main Post-Processing coordinator, entry point

convert_coordinates_vectorized(cell_df: pandas.DataFrame) → pandas.DataFrame

Convert the coordinates of the cells to a string representation for fast querying.

Parameters:: cell_df – DataFrame with cells containing patch_coordinates.
Returns:: DataFrame with converted coordinates as strings.
Return type:: pd.DataFrame

loki2.inference.overlap_cell_cleaner.convert_coordinates(row: pandas.Series) → pandas.Series

Convert a row from x,y type to one string representation of the patch position for fast querying Repr: x_y