Installation

cellDancer requires Python version >= 3.7.6 to run.

The source code of cellDancer is available at https://github.com/GuangyuWangLab2021/cellDancer.

To run the notebook locally, create an conda or Anaconda environment as conda create -n cellDancer python==3.7.6, and activate the new environment with conda activate cellDancer. cellDancer could be installed with pip install celldancer.

To install cellDancer from source code, run 'pip install your_path/cellDancer'.

For M1 Mac users: if you encountered a problem while installing bezier. Please refer to the following link: https://docs.conda.io/en/latest/.

If any other dependency could not be installed with pip install celldancer, try pip install --no-deps celldancer. Then install the dependencies by pip install -r requirements.txt or install each package independently.