Release Notes

Version 1.1.7 Apr 21, 2023

  • Added progress bar for celldancer.utilities.adata_to_df_with_embed and celldancer.utilities.adata_to_raw.

  • Added try except to catch genes with low quality in celldancer.velocity.

Version 1.1.4 Mar 21, 2023

  • Released cellDancer at PyPI. Mainly updated requirements.txt and setup.py.

Version 1.1.3 Oct 16, 2022

  • Added celldancer.utilities.to_dynamo and celldancer.utilities.export_velocity_to_dynamo to import cellDancer results to dynamo.

  • Added deep learning parameters n_neighbors, dt, and learning_rate in function celldancer.velocity.

  • Added new loss function: mix, rmse in function celldancer.velocity.

Version 1.1.2 Jun 27, 2022

  • Updated three notebooks of case studies.

Version 1.1.1 Jun 21, 2022

  • Renamed celldancer.cdplt.graph to celldancer.cdplt.PTO_Graph in API section.

Version 1.1.0 Jun 15, 2022

  • Added three notebooks of case studies.

  • Added Installation page and Data Preparation page.

  • Added celldancer.adata_to_raw_with_embed in API section.

Version 1.0.2 May 3, 2022

  • Optimized parallelized computing in celldancer.velocity.

Version 1.0.1 Apr 5, 2022

  • Updated APIs (celldancer.velocity, celldancer.compute, celldancer.pseudotime, celldancer.embedding, celldancer.cdplt.scatter_gene, celldancer.cdplt.scatter_cell, celldancer.cdplt.plot_kinetic_para, celldancer.cdplt.graph).

Version 1.0.0 Dec 2, 2021

  • Added index page.

  • Added APIs (celldancer.velocity, celldancer.compute, celldancer.pseudotime, celldancer.embedding, celldancer.cdplt.scatter_gene, celldancer.cdplt.scatter_cell, celldancer.cdplt.plot_kinetic_para, celldancer.cdplt.graph).