Release Notes¶
Version 1.1.7 Apr 21, 2023¶
Added progress bar for
celldancer.utilities.adata_to_df_with_embed
andcelldancer.utilities.adata_to_raw
.Added try except to catch genes with low quality in
celldancer.velocity
.
Version 1.1.4 Mar 21, 2023¶
Released cellDancer at PyPI. Mainly updated requirements.txt and setup.py.
Version 1.1.3 Oct 16, 2022¶
Added
celldancer.utilities.to_dynamo
andcelldancer.utilities.export_velocity_to_dynamo
to import cellDancer results to dynamo.Added deep learning parameters n_neighbors, dt, and learning_rate in function
celldancer.velocity
.Added new loss function: mix, rmse in function
celldancer.velocity
.
Version 1.1.2 Jun 27, 2022¶
Updated three notebooks of case studies.
Version 1.1.1 Jun 21, 2022¶
Renamed
celldancer.cdplt.graph
tocelldancer.cdplt.PTO_Graph
in API section.
Version 1.1.0 Jun 15, 2022¶
Added three notebooks of case studies.
Added Installation page and Data Preparation page.
Added
celldancer.adata_to_raw_with_embed
in API section.
Version 1.0.2 May 3, 2022¶
Optimized parallelized computing in
celldancer.velocity
.
Version 1.0.1 Apr 5, 2022¶
Updated APIs (
celldancer.velocity
,celldancer.compute
,celldancer.pseudotime
,celldancer.embedding
,celldancer.cdplt.scatter_gene
,celldancer.cdplt.scatter_cell
,celldancer.cdplt.plot_kinetic_para
,celldancer.cdplt.graph
).
Version 1.0.0 Dec 2, 2021¶
Added index page.
Added APIs (
celldancer.velocity
,celldancer.compute
,celldancer.pseudotime
,celldancer.embedding
,celldancer.cdplt.scatter_gene
,celldancer.cdplt.scatter_cell
,celldancer.cdplt.plot_kinetic_para
,celldancer.cdplt.graph
).