Loki
ST-bank database
ST-bank database
Pretrained weights
Pretrained weights
Loki
API
Tutorials
Installation
Basic Usage of OmiCLIP Model
Loki Align - 8 normal small intestine samples
Loki Align - 2 ovarian carcinosarcoma samples
Loki Annotate - Bulk RNA-seq
Loki Annotate - Marker Genes
Loki Decompose - TNBC Sample
Loki Decompose - CRC Sample
Loki Retrieve
Loki PredEx
Loki
Index
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
P
|
Q
|
R
|
S
|
T
|
W
|
X
|
Y
_
__init__() (loki.align.DeformableRegistration method)
(loki.align.EMRegistration method)
A
align_tissue() (in module loki.align)
alpha (loki.align.DeformableRegistration attribute)
annotate_with_bulk() (in module loki.annotate)
annotate_with_marker_genes() (in module loki.annotate)
apply_homography() (in module loki.align)
B
beta (loki.align.DeformableRegistration attribute)
C
cell_type_decompose() (in module loki.decompose)
D
D (loki.align.EMRegistration attribute)
DeformableRegistration (class in loki.align)
diff (loki.align.EMRegistration attribute)
E
EMRegistration (class in loki.align)
encode_images() (in module loki.utils)
encode_text_df() (in module loki.utils)
encode_texts() (in module loki.utils)
F
find_homography_translation_rotation() (in module loki.align)
G
generate_feature_ad() (in module loki.decompose)
generate_gene_df() (in module loki.preprocess)
get_library_id() (in module loki.preprocess)
get_scalefactors() (in module loki.preprocess)
get_spot_diameter_in_pixels() (in module loki.preprocess)
I
iteration (loki.align.EMRegistration attribute)
L
load_data_for_annotation() (in module loki.preprocess)
load_image_annotation() (in module loki.annotate)
load_model() (in module loki.utils)
low_rank (loki.align.DeformableRegistration attribute)
M
M (loki.align.EMRegistration attribute)
max_iterations (loki.align.EMRegistration attribute)
N
N (loki.align.EMRegistration attribute)
Np (loki.align.EMRegistration attribute)
num_eig (loki.align.DeformableRegistration attribute)
P
P (loki.align.EMRegistration attribute)
P1 (loki.align.EMRegistration attribute)
plot_alignment() (in module loki.plot)
plot_alignment_with_img() (in module loki.plot)
plot_annotation_heatmap() (in module loki.plot)
plot_img_with_annotation() (in module loki.plot)
predict_st_gene_expr() (in module loki.predex)
prepare_data_for_alignment() (in module loki.preprocess)
Pt1 (loki.align.EMRegistration attribute)
Q
q (loki.align.EMRegistration attribute)
R
retrieve_st_by_image() (in module loki.retrieve)
S
segment_patches() (in module loki.preprocess)
sigma2 (loki.align.EMRegistration attribute)
T
tolerance (loki.align.EMRegistration attribute)
TY (loki.align.EMRegistration attribute)
W
w (loki.align.EMRegistration attribute)
X
X (loki.align.EMRegistration attribute)
Y
Y (loki.align.EMRegistration attribute)